/EXTERNAL BLUEPRINT/K006426_14_lane_gembs/NC15_72.Bisulfite-Seq.DNA_Methylation.EGAX00001364661

BACK

SAMPLE K006426_14_lane_gembs LANE NC15_72.Bisulfite-Seq.DNA_Methylation.EGAX00001364661

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1172399598 100.00 % 586199799 100.00 % 586199799 100.00 %
General Reads 1142828558 97.48 % 574018462 97.92 % 568810096 97.03 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5658020 0.48 % 2838797 0.48 % 2819223 0.48 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23913020 2.04 % 9342540 1.59 % 14570480 2.49 %
Bisulfite_reads C2T 587778419 50.13 % 295200326 50.36 % 292578093 49.91 %
Bisulfite_reads G2A 560708159 47.83 % 281656933 48.05 % 279051226 47.60 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 486378671
Average Unique 82.97 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 46070666684 38.53 % 17612591304 29.46 % 28458075380 47.59 %
Base Counts Overall C 13167454206 11.01 % 635045393 1.06 % 12532408813 20.96 %
Base Counts Overall G 13272658274 11.10 % 12662933333 21.18 % 609724941 1.02 %
Base Counts Overall T 45880868520 38.37 % 28291976015 47.32 % 17588892505 29.42 %
Base Counts Overall N 1193111312 1.00 % 589833453 0.99 % 603277859 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991921018299722
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 558210560



Mapping Quality

Mapping Quality Histogram
NC15_72.Bisulfite-Seq.DNA_Methylation.EGAX00001364661.mapq.png



Read Length

Read Length Reads
101 586199799
101 586199799



Insert Size Plot

Insert Size Histogram
NC15_72.Bisulfite-Seq.DNA_Methylation.EGAX00001364661.isize.png