/EXTERNAL BLUEPRINT/mapping_coverage/K006426_14_lane_gembs
BACK
SAMPLE K006426_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1139367649 |
100% |
105160876011 |
100% |
| Mapped |
1127780259 |
98.98 % |
103990549621 |
98.89 % |
| Passed |
967328965 |
84.90 % |
87784968927 |
83.48 % |
| NotPassed |
160451294 |
14.08 % |
16205580694 |
15.41 % |
| |
|
|
|
|
| LowMAPQ |
139345204 |
12.23 % |
14073865604 |
13.38 % |
| MateUnmapped |
11587390 |
1.02 % |
1170326390 |
1.11 % |
| Duplicate |
3461864 |
0.30 % |
349648264 |
0.33 % |
| BadOrientation |
4 |
0.00 % |
404 |
0.00 % |
| LargeInsertSize |
4868 |
0.00 % |
491668 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17639354 |
1.55 % |
1781574754 |
1.69 % |
| Unmapped |
11587390 |
1.02 % |
1170326390 |
1.11 % |
Base Level Counts
| Bases |
# |
% |
| Total |
97691485228 |
100% |
| Passed |
82323942417 |
84.27 % |
| Trimmed |
4296863085 |
4.40 % |
| Clipped |
121724979 |
0.12 % |
| Overlapping |
9784791322 |
10.02 % |
| LowQuality |
1164163425 |
1.19 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |