/EXTERNAL BLUEPRINT/methylation/K006426_14_lane_gembs

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SAMPLE K006426_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26785671 24470002 91.35 %
NonRefCpG 254919 195340 76.63 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006426_14_lane_gembs_coverage_refCpG.png ./IMG//K006426_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006426_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006426_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006426_14_lane_gembs_quality_refcpg.png ./IMG//K006426_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006426_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5597451 10.59 % 4887597 9.82 % 35006 7.23 % 15793 3.92 %
Intermediate (0.3-0.7) 5919507 11.20 % 5090031 10.23 % 65745 13.57 % 41801 10.37 %
Methylated (0.7-1) 41336838 78.21 % 39775940 79.95 % 383628 79.20 % 345525 85.71 %
Median Methylation 0.880 0.890 0.880 0.900