/EXTERNAL BLUEPRINT/K006338_12_lane_gembs

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SAMPLE K006338_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1228560814 100.00 % 614280407 100.00 % 614280407 100.00 %
General Reads 1164067852 94.75 % 583904045 95.05 % 580163807 94.45 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 25982063 2.11 % 13020000 2.12 % 12962063 2.11 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 38510899 3.13 % 17356362 2.83 % 21154537 3.44 %
Bisulfite_reads C2T 626205775 50.97 % 314133432 51.14 % 312072343 50.80 %
Bisulfite_reads G2A 563844140 45.89 % 282790613 46.04 % 281053527 45.75 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 480823365
Average Unique 78.27 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 44711076922 35.68 % 17561563643 28.03 % 27149513279 43.33 %
Base Counts Overall C 17271038919 13.78 % 985471430 1.57 % 16285567489 25.99 %
Base Counts Overall G 17518083161 13.98 % 16553723766 26.42 % 964359395 1.54 %
Base Counts Overall T 44548698824 35.55 % 26930717487 42.98 % 17617981337 28.12 %
Base Counts Overall N 1264305202 1.01 % 625125188 1.00 % 639180014 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991237793113663
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 575433632



Mapping Quality

Mapping Quality Histogram
K006338_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006338_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290185_12