/EXTERNAL BLUEPRINT/mapping_coverage/K006338_12_lane_gembs
BACK
SAMPLE K006338_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1151754573 |
100% |
100714518863 |
100% |
| Mapped |
1139834998 |
98.97 % |
99510641788 |
98.80 % |
| Passed |
921347657 |
80.00 % |
77443420347 |
76.89 % |
| NotPassed |
218487341 |
18.97 % |
22067221441 |
21.91 % |
| |
|
|
|
|
| LowMAPQ |
190030678 |
16.50 % |
19193098478 |
19.06 % |
| MateUnmapped |
11919575 |
1.03 % |
1203877075 |
1.20 % |
| Duplicate |
12336334 |
1.07 % |
1245969734 |
1.24 % |
| BadOrientation |
46 |
0.00 % |
4646 |
0.00 % |
| LargeInsertSize |
15244 |
0.00 % |
1539644 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16105039 |
1.40 % |
1626608939 |
1.62 % |
| Unmapped |
11919575 |
1.03 % |
1203877075 |
1.20 % |
Base Level Counts
| Bases |
# |
% |
| Total |
93051014574 |
100% |
| Passed |
72758390040 |
78.19 % |
| Trimmed |
3882831086 |
4.17 % |
| Clipped |
107038310 |
0.12 % |
| Overlapping |
15500555917 |
16.66 % |
| LowQuality |
802199221 |
0.86 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |