/EXTERNAL BLUEPRINT/methylation/K006338_12_lane_gembs

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SAMPLE K006338_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26668373 20671548 77.51 %
NonRefCpG 327287 158680 48.48 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006338_12_lane_gembs_coverage_refCpG.png ./IMG//K006338_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006338_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006338_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006338_12_lane_gembs_quality_refcpg.png ./IMG//K006338_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006338_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6341605 13.40 % 4723202 11.82 % 97582 17.70 % 28896 8.49 %
Intermediate (0.3-0.7) 7028338 14.85 % 4763557 11.93 % 119614 21.70 % 53148 15.61 %
Methylated (0.7-1) 33954928 71.75 % 30457488 76.25 % 334092 60.60 % 258505 75.91 %
Median Methylation 0.860 0.880 0.790 0.870