/EXTERNAL BLUEPRINT/K006342_12_lane_gembs

BACK

SAMPLE K006342_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1065966634 100.00 % 532983317 100.00 % 532983317 100.00 %
General Reads 1003839263 94.17 % 503717064 94.51 % 500122199 93.83 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 28523815 2.68 % 14296146 2.68 % 14227669 2.67 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 33603556 3.15 % 14970107 2.81 % 18633449 3.50 %
Bisulfite_reads C2T 544192842 51.05 % 273067467 51.23 % 271125375 50.87 %
Bisulfite_reads G2A 488170236 45.80 % 244945743 45.96 % 243224493 45.63 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 411095946
Average Unique 77.13 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38437144227 35.35 % 15285005602 28.12 % 23152138625 42.59 %
Base Counts Overall C 15341693030 14.11 % 917685213 1.69 % 14424007817 26.53 %
Base Counts Overall G 15505900327 14.26 % 14606555294 26.87 % 899345033 1.65 %
Base Counts Overall T 38349121152 35.27 % 23012535792 42.33 % 15336585360 28.21 %
Base Counts Overall N 1094737932 1.01 % 542516433 1.00 % 552221499 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990919043424265
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 498564253



Mapping Quality

Mapping Quality Histogram
K006342_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006342_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
BM190913.Bisulfite-Seq.DNA_Methylation.EGAX00001290189_12