/EXTERNAL BLUEPRINT/mapping_coverage/K006342_12_lane_gembs
BACK
SAMPLE K006342_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
992814229 |
100% |
86897894603 |
100% |
| Mapped |
982567302 |
98.97 % |
85862954976 |
98.81 % |
| Passed |
781075451 |
78.67 % |
65512278025 |
75.39 % |
| NotPassed |
201491851 |
20.30 % |
20350676951 |
23.42 % |
| |
|
|
|
|
| LowMAPQ |
175882022 |
17.72 % |
17764084222 |
20.44 % |
| MateUnmapped |
10246927 |
1.03 % |
1034939627 |
1.19 % |
| Duplicate |
11047863 |
1.11 % |
1115834163 |
1.28 % |
| BadOrientation |
52 |
0.00 % |
5252 |
0.00 % |
| LargeInsertSize |
20950 |
0.00 % |
2115950 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14540964 |
1.46 % |
1468637364 |
1.69 % |
| Unmapped |
10246927 |
1.03 % |
1034939627 |
1.19 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78883884661 |
100% |
| Passed |
61556144495 |
78.03 % |
| Trimmed |
3289865725 |
4.17 % |
| Clipped |
90856616 |
0.12 % |
| Overlapping |
13280750020 |
16.84 % |
| LowQuality |
666267805 |
0.84 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |