/EXTERNAL BLUEPRINT/methylation/K006342_12_lane_gembs

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SAMPLE K006342_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26413359 19320877 73.15 %
NonRefCpG 332843 144453 43.40 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006342_12_lane_gembs_coverage_refCpG.png ./IMG//K006342_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006342_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006342_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006342_12_lane_gembs_quality_refcpg.png ./IMG//K006342_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006342_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6085219 13.29 % 4255869 11.48 % 101172 18.55 % 26735 8.64 %
Intermediate (0.3-0.7) 7329238 16.00 % 4622982 12.47 % 125216 22.96 % 49776 16.09 %
Methylated (0.7-1) 32380102 70.71 % 28199291 76.05 % 318950 58.49 % 232782 75.26 %
Median Methylation 0.850 0.870 0.780 0.870