/EXTERNAL BLUEPRINT/K006347_9_lane_gembs/BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290286_9

BACK

SAMPLE K006347_9_lane_gembs LANE BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290286_9

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1020634224 100.00 % 510317112 100.00 % 510317112 100.00 %
General Reads 985410229 96.55 % 494113370 96.82 % 491296859 96.27 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13382687 1.31 % 6704671 1.31 % 6678016 1.31 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21841308 2.14 % 9499071 1.86 % 12342237 2.42 %
Bisulfite_reads C2T 520316259 50.98 % 260903589 51.13 % 259412670 50.83 %
Bisulfite_reads G2A 478476657 46.88 % 239914452 47.01 % 238562205 46.75 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 414244118
Average Unique 81.17 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38088900447 36.59 % 14725012916 28.29 % 23363887531 44.89 %
Base Counts Overall C 13441046208 12.91 % 667112995 1.28 % 12773933213 24.54 %
Base Counts Overall G 13690291250 13.15 % 13047621060 25.07 % 642670190 1.23 %
Base Counts Overall T 37825621514 36.33 % 23095645969 44.37 % 14729975545 28.30 %
Base Counts Overall N 1058831429 1.02 % 516952484 0.99 % 541878945 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9994153258802947
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 486423323



Mapping Quality

Mapping Quality Histogram
BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290286_9.mapq.png



Read Length

Read Length Reads
101 510317112
101 510317112



Insert Size Plot

Insert Size Histogram
BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290286_9.isize.png