/EXTERNAL BLUEPRINT/mapping_coverage/K006347_9_lane_gembs
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SAMPLE K006347_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
973714722 |
100% |
87000350305 |
100% |
| Mapped |
964939555 |
99.10 % |
86114058438 |
98.98 % |
| Passed |
799249770 |
82.08 % |
69379390153 |
79.75 % |
| NotPassed |
165689785 |
17.02 % |
16734668285 |
19.24 % |
| |
|
|
|
|
| LowMAPQ |
142624908 |
14.65 % |
14405115708 |
16.56 % |
| MateUnmapped |
8775167 |
0.90 % |
886291867 |
1.02 % |
| Duplicate |
11709779 |
1.20 % |
1182687679 |
1.36 % |
| BadOrientation |
22 |
0.00 % |
2222 |
0.00 % |
| LargeInsertSize |
7324 |
0.00 % |
739724 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11347752 |
1.17 % |
1146122952 |
1.32 % |
| Unmapped |
8775167 |
0.90 % |
886291867 |
1.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
80718691061 |
100% |
| Passed |
65214424371 |
80.79 % |
| Trimmed |
3444197395 |
4.27 % |
| Clipped |
93481577 |
0.12 % |
| Overlapping |
11245819331 |
13.93 % |
| LowQuality |
720768387 |
0.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |