/EXTERNAL BLUEPRINT/methylation/K006347_9_lane_gembs

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SAMPLE K006347_9_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26816803 21280402 79.35 %
NonRefCpG 334915 164563 49.14 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006347_9_lane_gembs_coverage_refCpG.png ./IMG//K006347_9_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006347_9_lane_gembs_coverage_nonRefCpG.png ./IMG//K006347_9_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006347_9_lane_gembs_quality_refcpg.png ./IMG//K006347_9_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006347_9_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6555926 13.21 % 4962239 11.60 % 122883 20.61 % 37432 9.85 %
Intermediate (0.3-0.7) 7925510 15.97 % 5739451 13.42 % 130553 21.90 % 66394 17.46 %
Methylated (0.7-1) 35146468 70.82 % 32058997 74.97 % 342695 57.49 % 276384 72.69 %
Median Methylation 0.840 0.860 0.770 0.850