/EXTERNAL BLUEPRINT/K006346_9_lane_gembs

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SAMPLE K006346_9_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1036085238 100.00 % 518042619 100.00 % 518042619 100.00 %
General Reads 1000138944 96.53 % 501968989 96.90 % 498169955 96.16 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13742753 1.33 % 6891843 1.33 % 6850910 1.32 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 22203541 2.14 % 9181787 1.77 % 13021754 2.51 %
Bisulfite_reads C2T 526175364 50.78 % 264079551 50.98 % 262095813 50.59 %
Bisulfite_reads G2A 487706333 47.07 % 244781281 47.25 % 242925052 46.89 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 424086932
Average Unique 81.86 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38884791515 36.79 % 14862916216 28.13 % 24021875299 45.46 %
Base Counts Overall C 13429251620 12.71 % 661513801 1.25 % 12767737819 24.16 %
Base Counts Overall G 13711044957 12.97 % 13082154131 24.76 % 628890826 1.19 %
Base Counts Overall T 38581792616 36.51 % 23708466033 44.87 % 14873326583 28.15 %
Base Counts Overall N 1073813568 1.02 % 525296957 0.99 % 548516611 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9995022815186306
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 492883909



Mapping Quality

Mapping Quality Histogram
K006346_9_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006346_9_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
BM030613.Bisulfite-Seq.DNA_Methylation.EGAX00001290285_9