/EXTERNAL BLUEPRINT/mapping_coverage/K006346_9_lane_gembs
BACK
SAMPLE K006346_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
984525136 |
100% |
87934262837 |
100% |
| Mapped |
974479866 |
98.98 % |
86919690567 |
98.85 % |
| Passed |
810842442 |
82.36 % |
70392310743 |
80.05 % |
| NotPassed |
163637424 |
16.62 % |
16527379824 |
18.80 % |
| |
|
|
|
|
| LowMAPQ |
135559166 |
13.77 % |
13691475766 |
15.57 % |
| MateUnmapped |
10045270 |
1.02 % |
1014572270 |
1.15 % |
| Duplicate |
15632252 |
1.59 % |
1578857452 |
1.80 % |
| BadOrientation |
14 |
0.00 % |
1414 |
0.00 % |
| LargeInsertSize |
5892 |
0.00 % |
595092 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12440100 |
1.26 % |
1256450100 |
1.43 % |
| Unmapped |
10045270 |
1.02 % |
1014572270 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81889662235 |
100% |
| Passed |
66138618397 |
80.77 % |
| Trimmed |
3502527956 |
4.28 % |
| Clipped |
100865491 |
0.12 % |
| Overlapping |
11396486001 |
13.92 % |
| LowQuality |
751164390 |
0.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |