/EXTERNAL BLUEPRINT/mapping_coverage/K010541_1_lane_gembs
BACK
SAMPLE K010541_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1090058487 |
100% |
94884888057 |
100% |
| Mapped |
1076795291 |
98.78 % |
93545305261 |
98.59 % |
| Passed |
811384731 |
74.43 % |
66738838701 |
70.34 % |
| NotPassed |
265410560 |
24.35 % |
26806466560 |
28.25 % |
| |
|
|
|
|
| LowMAPQ |
222460228 |
20.41 % |
22468483028 |
23.68 % |
| MateUnmapped |
13263196 |
1.22 % |
1339582796 |
1.41 % |
| Duplicate |
12759546 |
1.17 % |
1288714146 |
1.36 % |
| BadOrientation |
90 |
0.00 % |
9090 |
0.00 % |
| LargeInsertSize |
41574 |
0.00 % |
4198974 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
30149122 |
2.77 % |
3045061322 |
3.21 % |
| Unmapped |
13263196 |
1.22 % |
1339582796 |
1.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81944574521 |
100% |
| Passed |
62742306894 |
76.57 % |
| Trimmed |
3416545181 |
4.17 % |
| Clipped |
111233463 |
0.14 % |
| Overlapping |
15094502357 |
18.42 % |
| LowQuality |
579986626 |
0.71 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |