/EXTERNAL BLUEPRINT/methylation/K010541_1_lane_gembs

BACK

SAMPLE K010541_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26199899 19129021 73.01 %
NonRefCpG 396309 140834 35.54 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010541_1_lane_gembs_coverage_refCpG.png ./IMG//K010541_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010541_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010541_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010541_1_lane_gembs_quality_refcpg.png ./IMG//K010541_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010541_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5938068 13.20 % 4261489 11.73 % 165928 25.73 % 36224 11.21 %
Intermediate (0.3-0.7) 6840028 15.20 % 4217416 11.61 % 148512 23.03 % 55059 17.04 %
Methylated (0.7-1) 32213008 71.60 % 27849341 76.66 % 330435 51.24 % 231834 71.75 %
Median Methylation 0.860 0.880 0.710 0.860