/EXTERNAL BLUEPRINT/mapping_coverage/K006350_12_lane_gembs
BACK
SAMPLE K006350_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
939052001 |
100% |
82536011852 |
100% |
| Mapped |
930398348 |
99.08 % |
81661992899 |
98.94 % |
| Passed |
758238016 |
80.75 % |
64273799367 |
77.87 % |
| NotPassed |
172160332 |
18.33 % |
17388193532 |
21.07 % |
| |
|
|
|
|
| LowMAPQ |
148746922 |
15.84 % |
15023439122 |
18.20 % |
| MateUnmapped |
8653653 |
0.92 % |
874018953 |
1.06 % |
| Duplicate |
10379779 |
1.11 % |
1048357679 |
1.27 % |
| BadOrientation |
44 |
0.00 % |
4444 |
0.00 % |
| LargeInsertSize |
11096 |
0.00 % |
1120696 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13022491 |
1.39 % |
1315271591 |
1.59 % |
| Unmapped |
8653653 |
0.92 % |
874018953 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
76577645712 |
100% |
| Passed |
60437599464 |
78.92 % |
| Trimmed |
3232335117 |
4.22 % |
| Clipped |
87708131 |
0.11 % |
| Overlapping |
12216138214 |
15.95 % |
| LowQuality |
603864786 |
0.79 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |