/EXTERNAL BLUEPRINT/K006359_11_lane_gembs/BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300958_11

BACK

SAMPLE K006359_11_lane_gembs LANE BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300958_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1106859078 100.00 % 553429539 100.00 % 553429539 100.00 %
General Reads 1051053956 94.96 % 526755738 95.18 % 524298218 94.74 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22937916 2.07 % 11486067 2.08 % 11451849 2.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 32867206 2.97 % 15187734 2.74 % 17679472 3.19 %
Bisulfite_reads C2T 562391742 50.81 % 281875028 50.93 % 280516714 50.69 %
Bisulfite_reads G2A 511600130 46.22 % 256366777 46.32 % 255233353 46.12 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 434028662
Average Unique 78.43 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40352897169 35.74 % 15824741265 28.03 % 24528155904 43.45 %
Base Counts Overall C 15644348250 13.86 % 935430583 1.66 % 14708917667 26.06 %
Base Counts Overall G 15799266768 13.99 % 14890499172 26.38 % 908767596 1.61 %
Base Counts Overall T 39958743431 35.39 % 24225760198 42.92 % 15732983233 27.87 %
Base Counts Overall N 1144370338 1.01 % 573381760 1.02 % 570988578 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989761254372329
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 520117272



Mapping Quality

Mapping Quality Histogram
BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300958_11.mapq.png



Read Length

Read Length Reads
101 553429539
101 553429539



Insert Size Plot

Insert Size Histogram
BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300958_11.isize.png