/EXTERNAL BLUEPRINT/mapping_coverage/K006359_11_lane_gembs
BACK
SAMPLE K006359_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1040276274 |
100% |
91226615517 |
100% |
| Mapped |
1031033285 |
99.11 % |
90293073628 |
98.98 % |
| Passed |
832834015 |
80.06 % |
70274947358 |
77.03 % |
| NotPassed |
198199270 |
19.05 % |
20018126270 |
21.94 % |
| |
|
|
|
|
| LowMAPQ |
172407744 |
16.57 % |
17413182144 |
19.09 % |
| MateUnmapped |
9242989 |
0.89 % |
933541889 |
1.02 % |
| Duplicate |
10797875 |
1.04 % |
1090585375 |
1.20 % |
| BadOrientation |
28 |
0.00 % |
2828 |
0.00 % |
| LargeInsertSize |
14474 |
0.00 % |
1461874 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
14979149 |
1.44 % |
1512894049 |
1.66 % |
| Unmapped |
9242989 |
0.89 % |
933541889 |
1.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
84111581435 |
100% |
| Passed |
66169478066 |
78.67 % |
| Trimmed |
3540147892 |
4.21 % |
| Clipped |
85310669 |
0.10 % |
| Overlapping |
13751323408 |
16.35 % |
| LowQuality |
565321400 |
0.67 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |