/EXTERNAL BLUEPRINT/methylation/K006359_11_lane_gembs

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SAMPLE K006359_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26579407 20438416 76.90 %
NonRefCpG 326467 154335 47.27 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006359_11_lane_gembs_coverage_refCpG.png ./IMG//K006359_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006359_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006359_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006359_11_lane_gembs_quality_refcpg.png ./IMG//K006359_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006359_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6255481 13.26 % 4580691 11.57 % 100809 18.35 % 28773 8.64 %
Intermediate (0.3-0.7) 7129900 15.12 % 4781536 12.08 % 120339 21.91 % 52185 15.67 %
Methylated (0.7-1) 33778783 71.62 % 30234382 76.36 % 328171 59.74 % 252054 75.69 %
Median Methylation 0.860 0.880 0.790 0.870