/EXTERNAL BLUEPRINT/mapping_coverage/K006333_15_lane_gembs
BACK
SAMPLE K006333_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1337162195 |
100% |
117303561540 |
100% |
| Mapped |
1324194806 |
99.03 % |
115993855251 |
98.88 % |
| Passed |
1056216105 |
78.99 % |
88928006450 |
75.81 % |
| NotPassed |
267978701 |
20.04 % |
27065848801 |
23.07 % |
| |
|
|
|
|
| LowMAPQ |
234674528 |
17.55 % |
23702127328 |
20.21 % |
| MateUnmapped |
12967389 |
0.97 % |
1309706289 |
1.12 % |
| Duplicate |
15409601 |
1.15 % |
1556369701 |
1.33 % |
| BadOrientation |
56 |
0.00 % |
5656 |
0.00 % |
| LargeInsertSize |
16578 |
0.00 % |
1674378 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17877938 |
1.34 % |
1805671738 |
1.54 % |
| Unmapped |
12967389 |
0.97 % |
1309706289 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
106672207066 |
100% |
| Passed |
83617829256 |
78.39 % |
| Trimmed |
4484575914 |
4.20 % |
| Clipped |
132877531 |
0.12 % |
| Overlapping |
17611323085 |
16.51 % |
| LowQuality |
825601280 |
0.77 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |