/EXTERNAL BLUEPRINT/methylation/K006333_15_lane_gembs

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SAMPLE K006333_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26836741 21985326 81.92 %
NonRefCpG 337546 168498 49.92 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006333_15_lane_gembs_coverage_refCpG.png ./IMG//K006333_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006333_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006333_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006333_15_lane_gembs_quality_refcpg.png ./IMG//K006333_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006333_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6181879 12.60 % 4865327 11.31 % 117210 19.92 % 34572 9.19 %
Intermediate (0.3-0.7) 6719093 13.70 % 4885103 11.36 % 121851 20.71 % 58949 15.66 %
Methylated (0.7-1) 36148149 73.70 % 33251690 77.33 % 349357 59.37 % 282793 75.15 %
Median Methylation 0.870 0.880 0.790 0.870