/EXTERNAL BLUEPRINT/K006351_9_lane_gembs

BACK

SAMPLE K006351_9_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1030340968 100.00 % 515170484 100.00 % 515170484 100.00 %
General Reads 985764019 95.67 % 494451135 95.98 % 491312884 95.37 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18486823 1.79 % 9262787 1.80 % 9224036 1.79 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26090126 2.53 % 11456562 2.22 % 14633564 2.84 %
Bisulfite_reads C2T 525225531 50.98 % 263460780 51.14 % 261764751 50.81 %
Bisulfite_reads G2A 479025311 46.49 % 240253142 46.64 % 238772169 46.35 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 405815020
Average Unique 78.77 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 37493211464 35.68 % 14690532258 27.96 % 22802679206 43.39 %
Base Counts Overall C 14536677625 13.83 % 812179756 1.55 % 13724497869 26.12 %
Base Counts Overall G 14714806260 14.00 % 13924525022 26.50 % 790281238 1.50 %
Base Counts Overall T 37281348960 35.47 % 22598360068 43.01 % 14682988892 27.94 %
Base Counts Overall N 1068734427 1.02 % 521792264 0.99 % 546942163 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9990515880328403
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 486385221



Mapping Quality

Mapping Quality Histogram
K006351_9_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006351_9_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00008.Bisulfite-Seq.DNA_Methylation.EGAX00001290290_9