/EXTERNAL BLUEPRINT/mapping_coverage/K006351_9_lane_gembs
BACK
SAMPLE K006351_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
977524837 |
100% |
86277886878 |
100% |
| Mapped |
968150434 |
99.04 % |
85331072175 |
98.90 % |
| Passed |
785471891 |
80.35 % |
66880539332 |
77.52 % |
| NotPassed |
182678543 |
18.69 % |
18450532843 |
21.39 % |
| |
|
|
|
|
| LowMAPQ |
160530638 |
16.42 % |
16213594438 |
18.79 % |
| MateUnmapped |
9374403 |
0.96 % |
946814703 |
1.10 % |
| Duplicate |
8250179 |
0.84 % |
833268079 |
0.97 % |
| BadOrientation |
20 |
0.00 % |
2020 |
0.00 % |
| LargeInsertSize |
18386 |
0.00 % |
1856986 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13879320 |
1.42 % |
1401811320 |
1.62 % |
| Unmapped |
9374403 |
0.96 % |
946814703 |
1.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79327804305 |
100% |
| Passed |
62869060043 |
79.25 % |
| Trimmed |
3340728590 |
4.21 % |
| Clipped |
87671308 |
0.11 % |
| Overlapping |
12359593665 |
15.58 % |
| LowQuality |
670750699 |
0.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |