/EXTERNAL BLUEPRINT/K006360_11_lane_gembs/22965.Bisulfite-Seq.DNA_Methylation.EGAX00001300959_11

BACK

SAMPLE K006360_11_lane_gembs LANE 22965.Bisulfite-Seq.DNA_Methylation.EGAX00001300959_11

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1070705558 100.00 % 535352779 100.00 % 535352779 100.00 %
General Reads 1007753422 94.12 % 505090279 94.35 % 502663143 93.89 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 24156508 2.26 % 12093528 2.26 % 12062980 2.25 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 38795628 3.62 % 18168972 3.39 % 20626656 3.85 %
Bisulfite_reads C2T 542016654 50.62 % 271708036 50.75 % 270308618 50.49 %
Bisulfite_reads G2A 489893276 45.75 % 245475771 45.85 % 244417505 45.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 402008235
Average Unique 75.09 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38069885670 34.86 % 15325832985 28.07 % 22744052685 41.65 %
Base Counts Overall C 16097809874 14.74 % 614941146 1.13 % 15482868728 28.35 %
Base Counts Overall G 16175388624 14.81 % 15568709838 28.51 % 606678786 1.11 %
Base Counts Overall T 37763080700 34.58 % 22541369453 41.28 % 15221711247 27.88 %
Base Counts Overall N 1105802048 1.01 % 555130036 1.02 % 550672012 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988955416713602
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 493170655



Mapping Quality

Mapping Quality Histogram
22965.Bisulfite-Seq.DNA_Methylation.EGAX00001300959_11.mapq.png



Read Length

Read Length Reads
101 535352779
101 535352779



Insert Size Plot

Insert Size Histogram
22965.Bisulfite-Seq.DNA_Methylation.EGAX00001300959_11.isize.png