/EXTERNAL BLUEPRINT/mapping_coverage/K006360_11_lane_gembs
BACK
SAMPLE K006360_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
994149689 |
100% |
86815023853 |
100% |
| Mapped |
984776318 |
99.06 % |
85868313382 |
98.91 % |
| Passed |
761920177 |
76.64 % |
63359843141 |
72.98 % |
| NotPassed |
222856141 |
22.42 % |
22508470241 |
25.93 % |
| |
|
|
|
|
| LowMAPQ |
188787904 |
18.99 % |
19067578304 |
21.96 % |
| MateUnmapped |
9373371 |
0.94 % |
946710471 |
1.09 % |
| Duplicate |
13641894 |
1.37 % |
1377831294 |
1.59 % |
| BadOrientation |
68 |
0.00 % |
6868 |
0.00 % |
| LargeInsertSize |
35452 |
0.00 % |
3580652 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
20390823 |
2.05 % |
2059473123 |
2.37 % |
| Unmapped |
9373371 |
0.94 % |
946710471 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
76946421356 |
100% |
| Passed |
59707042985 |
77.60 % |
| Trimmed |
3194704150 |
4.15 % |
| Clipped |
77795715 |
0.10 % |
| Overlapping |
13508782500 |
17.56 % |
| LowQuality |
458096006 |
0.60 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |