/EXTERNAL BLUEPRINT/methylation/K006360_11_lane_gembs

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SAMPLE K006360_11_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25818951 9729770 37.68 %
NonRefCpG 291130 53211 18.28 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006360_11_lane_gembs_coverage_refCpG.png ./IMG//K006360_11_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006360_11_lane_gembs_coverage_nonRefCpG.png ./IMG//K006360_11_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006360_11_lane_gembs_quality_refcpg.png ./IMG//K006360_11_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006360_11_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 21977131 51.44 % 10017201 41.34 % 251324 52.79 % 72978 41.00 %
Intermediate (0.3-0.7) 9374434 21.94 % 4873559 20.11 % 122942 25.83 % 43498 24.44 %
Methylated (0.7-1) 11374968 26.62 % 9340068 38.55 % 101787 21.38 % 61510 34.56 %
Median Methylation 0.280 0.470 0.270 0.440