/EXTERNAL BLUEPRINT/K006356_10_lane_gembs

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SAMPLE K006356_10_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1086656274 100.00 % 543328137 100.00 % 543328137 100.00 %
General Reads 1029152128 94.71 % 516126878 94.99 % 513025250 94.42 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 29243161 2.69 % 14647691 2.70 % 14595470 2.69 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28260985 2.60 % 12553568 2.31 % 15707417 2.89 %
Bisulfite_reads C2T 551703513 50.77 % 276674541 50.92 % 275028972 50.62 %
Bisulfite_reads G2A 506691776 46.63 % 254100028 46.77 % 252591748 46.49 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 434764264
Average Unique 80.02 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40092904284 36.17 % 15408062315 27.80 % 24684841969 44.54 %
Base Counts Overall C 14833655235 13.38 % 835266149 1.51 % 13998389086 25.26 %
Base Counts Overall G 15096574666 13.62 % 14295625610 25.80 % 800949056 1.45 %
Base Counts Overall T 39707079525 35.82 % 24333838811 43.91 % 15373240714 27.74 %
Base Counts Overall N 1108726238 1.00 % 546677089 0.99 % 562049149 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989910420893982
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 513641115



Mapping Quality

Mapping Quality Histogram
K006356_10_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006356_10_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
BM060814.Bisulfite-Seq.DNA_Methylation.EGAX00001300955_10