/EXTERNAL BLUEPRINT/mapping_coverage/K006356_10_lane_gembs
BACK
SAMPLE K006356_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1016677814 |
100% |
89843659600 |
100% |
| Mapped |
1007168054 |
99.06 % |
88883173840 |
98.93 % |
| Passed |
824066961 |
81.05 % |
70389963447 |
78.35 % |
| NotPassed |
183101093 |
18.01 % |
18493210393 |
20.58 % |
| |
|
|
|
|
| LowMAPQ |
157154304 |
15.46 % |
15872584704 |
17.67 % |
| MateUnmapped |
9509760 |
0.94 % |
960485760 |
1.07 % |
| Duplicate |
12495977 |
1.23 % |
1262093677 |
1.40 % |
| BadOrientation |
40 |
0.00 % |
4040 |
0.00 % |
| LargeInsertSize |
10064 |
0.00 % |
1016464 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13440708 |
1.32 % |
1357511508 |
1.51 % |
| Unmapped |
9509760 |
0.94 % |
960485760 |
1.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
83225393396 |
100% |
| Passed |
66237621208 |
79.59 % |
| Trimmed |
3519616121 |
4.23 % |
| Clipped |
91610627 |
0.11 % |
| Overlapping |
12743819322 |
15.31 % |
| LowQuality |
632726118 |
0.76 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |