/EXTERNAL BLUEPRINT/methylation/K006356_10_lane_gembs

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SAMPLE K006356_10_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26673419 21287242 79.81 %
NonRefCpG 321839 162011 50.34 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006356_10_lane_gembs_coverage_refCpG.png ./IMG//K006356_10_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006356_10_lane_gembs_coverage_nonRefCpG.png ./IMG//K006356_10_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006356_10_lane_gembs_quality_refcpg.png ./IMG//K006356_10_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006356_10_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6293573 12.97 % 4807058 11.49 % 101463 18.18 % 30780 8.64 %
Intermediate (0.3-0.7) 6983288 14.39 % 4932685 11.79 % 116330 20.85 % 54436 15.28 %
Methylated (0.7-1) 35255092 72.64 % 32100708 76.72 % 340162 60.97 % 271019 76.08 %
Median Methylation 0.860 0.880 0.800 0.870