/EXTERNAL BLUEPRINT/mapping_coverage/K010370_1_lane_gembs
BACK
SAMPLE K010370_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
74069071 |
100% |
6414717002 |
100% |
| Mapped |
73381730 |
99.07 % |
6345295561 |
98.92 % |
| Passed |
60080059 |
81.11 % |
5001826790 |
77.97 % |
| NotPassed |
13301671 |
17.96 % |
1343468771 |
20.94 % |
| |
|
|
|
|
| LowMAPQ |
12112592 |
16.35 % |
1223371792 |
19.07 % |
| MateUnmapped |
687341 |
0.93 % |
69421441 |
1.08 % |
| Duplicate |
88169 |
0.12 % |
8905069 |
0.14 % |
| BadOrientation |
6 |
0.00 % |
606 |
0.00 % |
| LargeInsertSize |
1250 |
0.00 % |
126250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1099654 |
1.48 % |
111065054 |
1.73 % |
| Unmapped |
687341 |
0.93 % |
69421441 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
6058557013 |
100% |
| Passed |
4709634259 |
77.74 % |
| Trimmed |
254548968 |
4.20 % |
| Clipped |
6694682 |
0.11 % |
| Overlapping |
1050035541 |
17.33 % |
| LowQuality |
37643563 |
0.62 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |