/EXTERNAL BLUEPRINT/mapping_coverage/K006353_12_lane_gembs
BACK
SAMPLE K006353_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
924116545 |
100% |
81342120219 |
100% |
| Mapped |
915254957 |
99.04 % |
80447099831 |
98.90 % |
| Passed |
741044026 |
80.19 % |
62851795800 |
77.27 % |
| NotPassed |
174210931 |
18.85 % |
17595304031 |
21.63 % |
| |
|
|
|
|
| LowMAPQ |
152813588 |
16.54 % |
15434172388 |
18.97 % |
| MateUnmapped |
8861588 |
0.96 % |
895020388 |
1.10 % |
| Duplicate |
8148625 |
0.88 % |
823011125 |
1.01 % |
| BadOrientation |
34 |
0.00 % |
3434 |
0.00 % |
| LargeInsertSize |
11548 |
0.00 % |
1166348 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13237136 |
1.43 % |
1336950736 |
1.64 % |
| Unmapped |
8861588 |
0.96 % |
895020388 |
1.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
74840974043 |
100% |
| Passed |
59095413183 |
78.96 % |
| Trimmed |
3155482756 |
4.22 % |
| Clipped |
84568660 |
0.11 % |
| Overlapping |
11904609583 |
15.91 % |
| LowQuality |
600899861 |
0.80 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |