/EXTERNAL BLUEPRINT/K006361_10_lane_gembs/pz_298.Bisulfite-Seq.DNA_Methylation.EGAX00001300960

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SAMPLE K006361_10_lane_gembs LANE pz_298.Bisulfite-Seq.DNA_Methylation.EGAX00001300960

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1121142156 100.00 % 560571078 100.00 % 560571078 100.00 %
General Reads 1081431213 96.46 % 542219850 96.73 % 539211363 96.19 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 14915800 1.33 % 7473435 1.33 % 7442365 1.33 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24795143 2.21 % 10877793 1.94 % 13917350 2.48 %
Bisulfite_reads C2T 573105092 51.12 % 287344002 51.26 % 285761090 50.98 %
Bisulfite_reads G2A 523241921 46.67 % 262349283 46.80 % 260892638 46.54 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 442885567
Average Unique 79.01 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 41654709687 36.43 % 16048210226 28.07 % 25606499461 44.78 %
Base Counts Overall C 15035871760 13.15 % 745581607 1.30 % 14290290153 24.99 %
Base Counts Overall G 15302115953 13.38 % 14574751884 25.49 % 727364069 1.27 %
Base Counts Overall T 41221312992 36.05 % 25245912942 44.15 % 15975400050 27.94 %
Base Counts Overall N 1142489520 1.00 % 563793297 0.99 % 578696223 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989186907445711
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 525515112



Mapping Quality

Mapping Quality Histogram
pz_298.Bisulfite-Seq.DNA_Methylation.EGAX00001300960.mapq.png



Read Length

Read Length Reads
101 560571078
101 560571078



Insert Size Plot

Insert Size Histogram
pz_298.Bisulfite-Seq.DNA_Methylation.EGAX00001300960.isize.png