/EXTERNAL BLUEPRINT/mapping_coverage/K006361_10_lane_gembs
BACK
SAMPLE K006361_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1057599846 |
100% |
93512568139 |
100% |
| Mapped |
1047602549 |
99.05 % |
92502841142 |
98.92 % |
| Passed |
832496888 |
78.72 % |
70777169381 |
75.69 % |
| NotPassed |
215105661 |
20.34 % |
21725671761 |
23.23 % |
| |
|
|
|
|
| LowMAPQ |
174570328 |
16.51 % |
17631603128 |
18.85 % |
| MateUnmapped |
9997297 |
0.95 % |
1009726997 |
1.08 % |
| Duplicate |
23937177 |
2.26 % |
2417654877 |
2.59 % |
| BadOrientation |
46 |
0.00 % |
4646 |
0.00 % |
| LargeInsertSize |
10378 |
0.00 % |
1048178 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16587732 |
1.57 % |
1675360932 |
1.79 % |
| Unmapped |
9997297 |
0.95 % |
1009726997 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
84075889752 |
100% |
| Passed |
66619414577 |
79.24 % |
| Trimmed |
3541654685 |
4.21 % |
| Clipped |
121120640 |
0.14 % |
| Overlapping |
13177599731 |
15.67 % |
| LowQuality |
616100119 |
0.73 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |