/EXTERNAL BLUEPRINT/methylation/K006361_10_lane_gembs

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SAMPLE K006361_10_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26760177 19265356 71.99 %
NonRefCpG 326041 143826 44.11 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006361_10_lane_gembs_coverage_refCpG.png ./IMG//K006361_10_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006361_10_lane_gembs_coverage_nonRefCpG.png ./IMG//K006361_10_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006361_10_lane_gembs_quality_refcpg.png ./IMG//K006361_10_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006361_10_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8559256 17.49 % 6054002 15.14 % 132918 23.18 % 44449 12.85 %
Intermediate (0.3-0.7) 10943479 22.36 % 7569725 18.93 % 152049 26.51 % 77793 22.48 %
Methylated (0.7-1) 29435601 60.15 % 26367912 65.93 % 288561 50.31 % 223798 64.67 %
Median Methylation 0.780 0.810 0.700 0.810