/EXTERNAL BLUEPRINT/K006343_12_lane_gembs

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SAMPLE K006343_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1055182592 100.00 % 527591296 100.00 % 527591296 100.00 %
General Reads 972424330 92.16 % 487712057 92.44 % 484712273 91.87 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 39556005 3.75 % 19812839 3.76 % 19743166 3.74 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 43202257 4.09 % 20066400 3.80 % 23135857 4.39 %
Bisulfite_reads C2T 539315766 51.11 % 270500299 51.27 % 268815467 50.95 %
Bisulfite_reads G2A 472664569 44.79 % 237024597 44.93 % 235639972 44.66 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 392278224
Average Unique 74.35 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 37316302835 34.67 % 15147763970 28.15 % 22168538865 41.19 %
Base Counts Overall C 15951541681 14.82 % 1070816639 1.99 % 14880725042 27.65 %
Base Counts Overall G 16120305458 14.98 % 15071064740 28.01 % 1049240718 1.95 %
Base Counts Overall T 37176625898 34.54 % 21992080585 40.87 % 15184545313 28.22 %
Base Counts Overall N 1063848512 0.99 % 532586258 0.99 % 531262254 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.999269012925644
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 486640903



Mapping Quality

Mapping Quality Histogram
K006343_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006343_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
BM190913.Bisulfite-Seq.DNA_Methylation.EGAX00001290190_12