/EXTERNAL BLUEPRINT/mapping_coverage/K006343_12_lane_gembs
BACK
SAMPLE K006343_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
957032989 |
100% |
83953698227 |
100% |
| Mapped |
947564664 |
99.01 % |
82997397402 |
98.86 % |
| Passed |
723660914 |
75.62 % |
60383118652 |
71.92 % |
| NotPassed |
223903750 |
23.40 % |
22614278750 |
26.94 % |
| |
|
|
|
|
| LowMAPQ |
191536076 |
20.01 % |
19345143676 |
23.04 % |
| MateUnmapped |
9468325 |
0.99 % |
956300825 |
1.14 % |
| Duplicate |
15426045 |
1.61 % |
1558030545 |
1.86 % |
| BadOrientation |
68 |
0.00 % |
6868 |
0.00 % |
| LargeInsertSize |
33502 |
0.00 % |
3383702 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
16908059 |
1.77 % |
1707713959 |
2.03 % |
| Unmapped |
9468325 |
0.99 % |
956300825 |
1.14 % |
Base Level Counts
| Bases |
# |
% |
| Total |
73084261146 |
100% |
| Passed |
56809301556 |
77.73 % |
| Trimmed |
3046439106 |
4.17 % |
| Clipped |
73574956 |
0.10 % |
| Overlapping |
12627567538 |
17.28 % |
| LowQuality |
527377990 |
0.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |