/EXTERNAL BLUEPRINT/methylation/K006343_12_lane_gembs

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SAMPLE K006343_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25968129 17451958 67.21 %
NonRefCpG 337387 126365 37.45 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006343_12_lane_gembs_coverage_refCpG.png ./IMG//K006343_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006343_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006343_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006343_12_lane_gembs_quality_refcpg.png ./IMG//K006343_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006343_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5907218 13.72 % 3845661 11.76 % 99752 19.00 % 22873 8.69 %
Intermediate (0.3-0.7) 7331075 17.03 % 4101696 12.55 % 127565 24.29 % 42169 16.03 %
Methylated (0.7-1) 29812514 69.25 % 24741077 75.69 % 297757 56.71 % 198079 75.28 %
Median Methylation 0.840 0.870 0.760 0.870