/EXTERNAL BLUEPRINT/methylation/K006369_13_lane_gembs

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SAMPLE K006369_13_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26886098 22743059 84.59 %
NonRefCpG 320322 178883 55.84 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006369_13_lane_gembs_coverage_refCpG.png ./IMG//K006369_13_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006369_13_lane_gembs_coverage_nonRefCpG.png ./IMG//K006369_13_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006369_13_lane_gembs_quality_refcpg.png ./IMG//K006369_13_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006369_13_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6243408 12.49 % 5062784 11.30 % 99470 17.46 % 32988 8.40 %
Intermediate (0.3-0.7) 6372497 12.75 % 4865715 10.86 % 109776 19.27 % 57404 14.63 %
Methylated (0.7-1) 37359934 74.76 % 34871216 77.84 % 360412 63.27 % 302111 76.97 %
Median Methylation 0.870 0.880 0.820 0.870