/EXTERNAL BLUEPRINT/K006349_12_lane_gembs

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SAMPLE K006349_12_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1010203296 100.00 % 505101648 100.00 % 505101648 100.00 %
General Reads 972189050 96.24 % 487672867 96.55 % 484516183 95.92 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16438171 1.63 % 8236591 1.63 % 8201580 1.62 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21576075 2.14 % 9192190 1.82 % 12383885 2.45 %
Bisulfite_reads C2T 515374044 51.02 % 258526847 51.18 % 256847197 50.85 %
Bisulfite_reads G2A 473253177 46.85 % 237382611 47.00 % 235870566 46.70 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 403178910
Average Unique 79.82 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 36831655610 35.74 % 14374245315 27.90 % 22457410295 43.59 %
Base Counts Overall C 14166557900 13.75 % 781423107 1.52 % 13385134793 25.98 %
Base Counts Overall G 14359180227 13.94 % 13601701730 26.40 % 757478497 1.47 %
Base Counts Overall T 36638113980 35.56 % 22250562632 43.19 % 14387551348 27.93 %
Base Counts Overall N 1045228475 1.01 % 512435312 0.99 % 532793163 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9994861306513414
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 478858492



Mapping Quality

Mapping Quality Histogram
K006349_12_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006349_12_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
UMCG00012.Bisulfite-Seq.DNA_Methylation.EGAX00001290288_12