/EXTERNAL BLUEPRINT/mapping_coverage/K006349_12_lane_gembs
BACK
SAMPLE K006349_12_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
963213179 |
100% |
84568874430 |
100% |
| Mapped |
954123712 |
99.06 % |
83650838263 |
98.91 % |
| Passed |
780360167 |
81.02 % |
66100720218 |
78.16 % |
| NotPassed |
173763545 |
18.04 % |
17550118045 |
20.75 % |
| |
|
|
|
|
| LowMAPQ |
151484388 |
15.73 % |
15299923188 |
18.09 % |
| MateUnmapped |
9089467 |
0.94 % |
918036167 |
1.09 % |
| Duplicate |
8990808 |
0.93 % |
908071608 |
1.07 % |
| BadOrientation |
30 |
0.00 % |
3030 |
0.00 % |
| LargeInsertSize |
11596 |
0.00 % |
1171196 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13276723 |
1.38 % |
1340949023 |
1.59 % |
| Unmapped |
9089467 |
0.94 % |
918036167 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
78811991851 |
100% |
| Passed |
62148268107 |
78.86 % |
| Trimmed |
3323792394 |
4.22 % |
| Clipped |
90558601 |
0.11 % |
| Overlapping |
12620713032 |
16.01 % |
| LowQuality |
628659717 |
0.80 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |