/EXTERNAL BLUEPRINT/methylation/K006349_12_lane_gembs

BACK

SAMPLE K006349_12_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26518572 20732852 78.18 %
NonRefCpG 342178 155882 45.56 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006349_12_lane_gembs_coverage_refCpG.png ./IMG//K006349_12_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006349_12_lane_gembs_coverage_nonRefCpG.png ./IMG//K006349_12_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006349_12_lane_gembs_quality_refcpg.png ./IMG//K006349_12_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006349_12_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4654039 9.95 % 3303952 8.37 % 109796 19.19 % 28084 8.33 %
Intermediate (0.3-0.7) 6316519 13.50 % 4146159 10.50 % 118736 20.76 % 47621 14.13 %
Methylated (0.7-1) 35803159 76.55 % 32036230 81.13 % 343520 60.05 % 261368 77.54 %
Median Methylation 0.890 0.910 0.810 0.890