/EXTERNAL McGill EMC/mapping_coverage/K006127_1_lane_gembs
BACK
SAMPLE K006127_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
780886015 |
100% |
72518828504 |
100% |
| Mapped |
770646763 |
98.69 % |
71494903304 |
98.59 % |
| Passed |
653724759 |
83.72 % |
59802702904 |
82.47 % |
| NotPassed |
116922004 |
14.97 % |
11692200400 |
16.12 % |
| |
|
|
|
|
| LowMAPQ |
97096172 |
12.43 % |
9709617200 |
13.39 % |
| MateUnmapped |
10239252 |
1.31 % |
1023925200 |
1.41 % |
| Duplicate |
6798562 |
0.87 % |
679856200 |
0.94 % |
| BadOrientation |
32 |
0.00 % |
3200 |
0.00 % |
| LargeInsertSize |
3670 |
0.00 % |
367000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13023568 |
1.67 % |
1302356800 |
1.80 % |
| Unmapped |
10239252 |
1.31 % |
1023925200 |
1.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
65353800700 |
100% |
| Passed |
55395129782 |
84.76 % |
| Trimmed |
3004081349 |
4.60 % |
| Clipped |
61388107 |
0.09 % |
| Overlapping |
5489709689 |
8.40 % |
| LowQuality |
1403491773 |
2.15 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |