/EXTERNAL McGill EMC/K006128_1_lane_gembs

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SAMPLE K006128_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 374838210 100.00 % 187419105 100.00 % 187419105 100.00 %
General Reads 367966728 98.17 % 184827817 98.62 % 183138911 97.72 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 313542 0.08 % 157514 0.08 % 156028 0.08 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6557940 1.75 % 2433774 1.30 % 4124166 2.20 %
Bisulfite_reads C2T 187604223 50.05 % 94210252 50.27 % 93393971 49.83 %
Bisulfite_reads G2A 180676047 48.20 % 90775079 48.43 % 89900968 47.97 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 147673952
Average Unique 78.79 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14800004966 39.09 % 5825568989 30.78 % 8974435977 47.41 %
Base Counts Overall C 3951845822 10.44 % 181567513 0.96 % 3770278309 19.92 %
Base Counts Overall G 4000939241 10.57 % 3807410944 20.11 % 193528297 1.02 %
Base Counts Overall T 14670169632 38.75 % 8909550460 47.07 % 5760619172 30.43 %
Base Counts Overall N 435699549 1.15 % 205231699 1.08 % 230467850 1.22 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9958085590202873
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 168268250



Mapping Quality

Mapping Quality Histogram
K006128_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006128_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0036.Bisulfite-Seq.DNA_Methylation.EGAX00001273027.fastq_MS003601