/EXTERNAL McGill EMC/mapping_coverage/K006128_1_lane_gembs
BACK
SAMPLE K006128_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
365268718 |
100% |
31113343011 |
100% |
| Mapped |
361553031 |
98.98 % |
30741774311 |
98.81 % |
| Passed |
292318339 |
80.03 % |
23818305111 |
76.55 % |
| NotPassed |
69234692 |
18.95 % |
6923469200 |
22.25 % |
| |
|
|
|
|
| LowMAPQ |
54915060 |
15.03 % |
5491506000 |
17.65 % |
| MateUnmapped |
3715687 |
1.02 % |
371568700 |
1.19 % |
| Duplicate |
2731299 |
0.75 % |
273129900 |
0.88 % |
| BadOrientation |
36 |
0.00 % |
3600 |
0.00 % |
| LargeInsertSize |
2284 |
0.00 % |
228400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11586013 |
3.17 % |
1158601300 |
3.72 % |
| Unmapped |
3715687 |
1.02 % |
371568700 |
1.19 % |
Base Level Counts
| Bases |
# |
% |
| Total |
29221151200 |
100% |
| Passed |
22053574633 |
75.47 % |
| Trimmed |
1256761666 |
4.30 % |
| Clipped |
47679231 |
0.16 % |
| Overlapping |
5355166858 |
18.33 % |
| LowQuality |
507968812 |
1.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |