/EXTERNAL McGill EMC/methylation/K006128_1_lane_gembs

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SAMPLE K006128_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26000087 3768837 14.50 %
NonRefCpG 314193 27285 8.68 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006128_1_lane_gembs_coverage_refCpG.png ./IMG//K006128_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006128_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006128_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006128_1_lane_gembs_quality_refcpg.png ./IMG//K006128_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006128_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7652853 15.81 % 547646 4.89 % 127919 22.20 % 5550 5.67 %
Intermediate (0.3-0.7) 16150606 33.37 % 2540051 22.67 % 194468 33.75 % 22478 22.98 %
Methylated (0.7-1) 24596290 50.82 % 8118060 72.45 % 253797 44.05 % 69786 71.34 %
Median Methylation 0.700 0.830 0.640 0.830