/EXTERNAL McGill EMC/K006132_1_lane_gembs

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SAMPLE K006132_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 862671794 100.00 % 431335897 100.00 % 431335897 100.00 %
General Reads 812369846 94.17 % 406968565 94.35 % 405401281 93.99 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1038570 0.12 % 521116 0.12 % 517454 0.12 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 49263378 5.71 % 23846216 5.53 % 25417162 5.89 %
Bisulfite_reads C2T 417103295 48.35 % 208983061 48.45 % 208120234 48.25 %
Bisulfite_reads G2A 396305121 45.94 % 198506620 46.02 % 197798501 45.86 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 336791042
Average Unique 78.08 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33531340523 38.48 % 13930986903 31.98 % 19600353620 44.99 %
Base Counts Overall C 9727271606 11.16 % 993780735 2.28 % 8733490871 20.05 %
Base Counts Overall G 10025259244 11.51 % 8966255916 20.58 % 1059003328 2.43 %
Base Counts Overall T 32950772030 37.82 % 19240272759 44.16 % 13710499271 31.47 %
Base Counts Overall N 895207791 1.03 % 433629284 1.00 % 461578507 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9665559036174698
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 390567813



Mapping Quality

Mapping Quality Histogram
K006132_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006132_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0027.Bisulfite-Seq.DNA_Methylation.EGAX00001272987.fastq_MS002701