/EXTERNAL McGill EMC/mapping_coverage/K006132_1_lane_gembs
BACK
SAMPLE K006132_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
789897358 |
100% |
73516030557 |
100% |
| Mapped |
780761549 |
98.84 % |
72602449657 |
98.76 % |
| Passed |
632584103 |
80.08 % |
57784705057 |
78.60 % |
| NotPassed |
148177446 |
18.76 % |
14817744600 |
20.16 % |
| |
|
|
|
|
| LowMAPQ |
115848104 |
14.67 % |
11584810400 |
15.76 % |
| MateUnmapped |
9135809 |
1.16 % |
913580900 |
1.24 % |
| Duplicate |
22566433 |
2.86 % |
2256643300 |
3.07 % |
| BadOrientation |
42 |
0.00 % |
4200 |
0.00 % |
| LargeInsertSize |
51220 |
0.01 % |
5122000 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
9711647 |
1.23 % |
971164700 |
1.32 % |
| Unmapped |
9135809 |
1.16 % |
913580900 |
1.24 % |
Base Level Counts
| Bases |
# |
% |
| Total |
63233171100 |
100% |
| Passed |
53606365391 |
84.78 % |
| Trimmed |
2921714128 |
4.62 % |
| Clipped |
102166596 |
0.16 % |
| Overlapping |
5346299447 |
8.45 % |
| LowQuality |
1256625538 |
1.99 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |