/EXTERNAL McGill EMC/methylation/K006132_1_lane_gembs

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SAMPLE K006132_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26714780 18570069 69.51 %
NonRefCpG 265077 157733 59.50 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006132_1_lane_gembs_coverage_refCpG.png ./IMG//K006132_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006132_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006132_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006132_1_lane_gembs_quality_refcpg.png ./IMG//K006132_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006132_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4817196 9.29 % 1469621 3.68 % 42820 8.58 % 12078 3.42 %
Intermediate (0.3-0.7) 11103683 21.42 % 7030079 17.60 % 117082 23.47 % 65591 18.56 %
Methylated (0.7-1) 35923560 69.29 % 31434786 78.72 % 338997 67.95 % 275811 78.03 %
Median Methylation 0.830 0.870 0.820 0.860