/EXTERNAL McGill EMC/K006134_1_lane_gembs

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SAMPLE K006134_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 899289090 100.00 % 449644545 100.00 % 449644545 100.00 %
General Reads 825911582 91.84 % 413912321 92.05 % 411999261 91.63 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1621682 0.18 % 815141 0.18 % 806541 0.18 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 71755826 7.98 % 34917083 7.77 % 36838743 8.19 %
Bisulfite_reads C2T 422565278 46.99 % 211809760 47.11 % 210755518 46.87 %
Bisulfite_reads G2A 404967986 45.03 % 202917702 45.13 % 202050284 44.94 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 345242744
Average Unique 76.78 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 35114701133 38.66 % 14615103129 32.18 % 20499598004 45.14 %
Base Counts Overall C 10107531013 11.13 % 1183822073 2.61 % 8923708940 19.65 %
Base Counts Overall G 10415532459 11.47 % 9134299070 20.11 % 1281233389 2.82 %
Base Counts Overall T 34245728419 37.70 % 20025667010 44.10 % 14220061409 31.31 %
Base Counts Overall N 944705066 1.04 % 455207763 1.00 % 489497303 1.08 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9718636619319998
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 396133328



Mapping Quality

Mapping Quality Histogram
K006134_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006134_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0008.Bisulfite-Seq.DNA_Methylation.EGAX00001272844.fastq_MS000801